PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025723.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 292aa    MW: 33707.5 Da    PI: 5.9461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025723.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.71.1e-4051161111
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPt+eelv +yLk+k+ + k++l +vi ++d+y++ePwd+++k+k    e++ewyfFs++d+ky+ g+r+nrat++g+Wkatg+dk+vl+ 
  CCG025723.1   5 VPPGFRFHPTEEELVGYYLKRKILSLKIDL-DVIVDIDLYNMEPWDIQAKCKLgydEQNEWYFFSHKDRKYPPGTRTNRATAAGFWKATGRDKAVLT- 100
                  69****************************.99**************953333333677**************************************. PP

          NAM  96 kgelvglkktLvfykg 111
                  k++l+g+ ktLvfyk+
  CCG025723.1 101 KNRLIGMMKTLVFYKE 116
                  999***********65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-443127IPR003441NAC domain
PROSITE profilePS5100539.0235151IPR003441NAC domain
PfamPF023651.9E-226121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MESCVPPGFR FHPTEEELVG YYLKRKILSL KIDLDVIVDI DLYNMEPWDI QAKCKLGYDE  60
QNEWYFFSHK DRKYPPGTRT NRATAAGFWK ATGRDKAVLT KNRLIGMMKT LVFYKEEGWV  120
VCRAFKKPIL NQRQGFEAWN HAYYVNNINH ARPPSFSDTV TTTHMVHPNQ SASFHQPFSS  180
SSDLISHQEF LDNNNRLVEL PQLDSPSNLS TSFAPKEGNF HQTNEDYDEE RSNNSSQYID  240
WKSLDTLLAS QVNDSSTSSF PLQNFPSITQ NYDLAAGQQD HVSHFLDCFP DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-34211412121Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5999380.0AB599938.1 Populus trichocarpa PtVNS07 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005161.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_011005162.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9C8W91e-97NAC30_ARATH; NAC domain-containing protein 30
TrEMBLF1T1120.0F1T112_POPTR; Transcription factor
STRINGPOPTR_0013s11740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71383247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.18e-86vascular related NAC-domain protein 7